Vladimír Sychrovský: search on Z-Library

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1

Theoretical and Experimental Study of Charge Transfer through DNA: Impact of Mercury Mediated T-Hg-T Base Pair

Kratochvílová, Irena, Golan, Martin, Vala, Martin, Špérová, Miroslava, Weiter, Martin, Páv, Ondřej, Šebera, Jakub, Rosenberg, Ivan, Sychrovský, Vladimír, Tanaka, Yoshiyuki, Bickelhaupt, F. Matthias

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 1.38 MB

english, 2014

2

Exploring the Structure of a DNA Hairpin with the Help of NMR Spin−Spin Coupling Constants: An Experimental and Quantum Chemical Investigation

Sychrovský, Vladimír, Vacek, Jaroslav, Hobza, Pavel, Žídek, Lukáš, Sklenář, Vladimír, Cremer, Dieter

Journal:

Journal of Physical Chemistry B

Year:

2002

Language:

english

File:

PDF, 233 KB

english, 2002

3

Effect of local sugar and base geometry on13C and15N magnetic shielding anisotropy in DNA nucleosides

Eva Brumovská, Vladimír Sychrovský, Zuzana Vokáčová, Jiří Šponer, Bohdan Schneider, Lukáš Trantírek

Journal:

Journal of Biomolecular NMR

Year:

2008

Language:

english

File:

PDF, 1.20 MB

english, 2008

4

Sugar Edge/Sugar Edge Base Pairs in RNA: Stabilities and Structures from Quantum Chemical Calculations

Šponer, Judit E., Leszczynski, Jerzy, Sychrovský, Vladimír, Šponer, Jiří

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 379 KB

english, 2005

5

Limits in Proton Nuclear Singlet-State Lifetimes Measured with para -Hydrogen-Induced Polarization

Zhang, Yuning, Duan, Xueyou, Soon, Pei Che, Sychrovský, Vladimír, Canary, James W., Jerschow, Alexej

Journal:

Year:

2016

Language:

english

File:

PDF, 701 KB

english, 2016

6

The Inter-Strand Charge Transport within Metallo-DNA; the Effect due to Hg(II)- and Ag(I)-Mediated Base Pairs

Sebera, Jakub, Reha, David, Fukal, Jiri, Sychrovsky, Vladimir

Journal:

The Journal of Physical Chemistry C

Year:

2020

Language:

english

File:

PDF, 2.34 MB

english, 2020

7

A Complete Set of NMR Chemical Shifts and Spin−Spin Coupling Constants for l -Alanyl- l -alanine Zwitterion and Analysis of Its Conformational Behavior

Bouř, Petr, Buděšínský, Miloš, Špirko, Vladimír, Kapitán, Josef, Šebestík, Jaroslav, Sychrovský, Vladimír

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 427 KB

english, 2005

8

Dependence of the l -Alanyl- l -Alanine Conformation on Molecular Charge Determined from Ab Initio Computations and NMR Spectra

Sychrovský, Vladimír, Buděšínský, Miloš, Benda, Ladislav, Špirko, Vladimír, Vokáčová, Zuzana, Šebestík, Jaroslav, Bouř, Petr

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 448 KB

english, 2008

9

Erratum to: Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

Vavrinská, Andrea, Zelinka, Jiří, Šebera, Jakub, Sychrovský, Vladimír, Fiala, Radovan, Boelens, Rolf, Sklenář, Vladimír, Trantírek, Lukáš

Journal:

Journal of Biomolecular NMR

Year:

2016

Language:

english

File:

PDF, 289 KB

english, 2016

10

Detection of Mercury–TpT Dinucleotide Binding by Raman Spectra: A Computational Study

Benda, Ladislav, Straka, Michal, Sychrovský, Vladimír, Bouř, Petr, Tanaka, Yoshiyuki

Journal:

Journal of Physical Chemistry A

Year:

2012

Language:

english

File:

PDF, 2.17 MB

english, 2012

11

Structure Determination of an Ag I -Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with 1 H/ 15 N/ 109 Ag NMR Spectroscopy

Dairaku, Takenori, Furuita, Kyoko, Sato, Hajime, Šebera, Jakub, Nakashima, Katsuyuki, Kondo, Jiro, Yamanaka, Daichi, Kondo, Yoshinori, Okamoto, Itaru, Ono, Akira, Sychrovský, Vladimír, Kojima, Chojiro

Journal:

Chemistry - A European Journal

Year:

2016

Language:

english

File:

PDF, 863 KB

english, 2016

12

Brillouin-Wigner Perturbation Theory as a Possible more Effective Alternative to Many-Body Rayleigh-Schrodinger Perturbation Theory and Coupled Cluster Theory

Čársky, Petr, Hrouda, Vojtěch, Sychrovský, Vladimír, Hubač, Ivan, Babinec, Peter, Mach, Pavol, Urban, Ján, Mášik, Jozef

Journal:

Collection of Czechoslovak Chemical Communications

Year:

1995

Language:

english

File:

PDF, 62 KB

english, 1995

13

2P119 Nitrogen-15 NMR spectroscopic studies of Ag(I)-mediated C-C base-pairs(05A. Nucleic acid: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Dairaku, Takenori, Furuita, Kyoko, Okamoto, Itaru, Oda, Shuji, Yamanaka, Daichi, Kondo, Yoshinori, Ono, Akira, Kojima, Chojiro, Sychrovsky, Vladimir, Tanaka, Yoshiyuki

Journal:

Seibutsu Butsuri

Year:

2014

Language:

english

File:

PDF, 695 KB

english, 2014

14

Calculation of Structural Behavior of Indirect NMR Spin−Spin Couplings in the Backbone of Nucleic Acids

Sychrovský, Vladimír, Vokáčová, Zuzana, Šponer, Jiří, Špačková, Nad'a, Schneider, Bohdan

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 200 KB

english, 2006

15

Restricted Conformational Flexibility of Furanose Derivatives: Ab Initio Interpretation of Their Nuclear Spin−Spin Coupling Constants

Bouř, Petr, Raich, Ivan, Kaminský, Jakub, Hrabal, Richard, Čejka, Jan, Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry A

Year:

2004

Language:

english

File:

PDF, 158 KB

english, 2004

16

The structural model of Zika virus RNA-dependent RNA polymerase in complex with RNA for rational design of novel nucleotide inhibitors

Šebera, Jakub, Dubankova, Anna, Sychrovský, Vladimír, Ruzek, Daniel, Boura, Evzen, Nencka, Radim

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.39 MB

english, 2018

17

The effect of water on NMR spin–spin couplings in DNA: Improvement of calculated values by application of two solvent models

Sychrovský, Vladimír, Schneider, Bohdan, Hobza, Pavel, Žídek, Lukáš, Sklenář, Vladimír

Journal:

Physical Chemistry Chemical Physics

Year:

2003

Language:

english

File:

PDF, 144 KB

english, 2003

18

Conformation of the Dipeptide Cyclo( L -Pro- L -Pro) Monitored by the Nuclear Magnetic Resonance and Raman Optical Activity Spectra. Experimental and ab Initio Computational Study

Bouř, Petr, Sychrovský, Vladimír, Maloň, Petr, Hanzlíková, Jana, Baumruk, Vladimír, Pospíšek, Jan, Buděšínský, Miloš

Journal:

Journal of Physical Chemistry A

Year:

2002

Language:

english

File:

PDF, 81 KB

english, 2002

19

Structures, physicochemical properties, and applications of T–Hg II –T, C–Ag I –C, and other metallo-base-pairs

Tanaka, Yoshiyuki, Kondo, Jiro, Sychrovský, Vladimír, Šebera, Jakub, Dairaku, Takenori, Saneyoshi, Hisao, Urata, Hidehito, Torigoe, Hidetaka, Ono, Akira

Journal:

Chemical Communications

Year:

2015

Language:

english

File:

PDF, 4.02 MB

english, 2015

20

Correlating the 31 P NMR Chemical Shielding Tensor and the 2J P,C Spin–Spin Coupling Constants with Torsion Angles ζ and α in the Backbone of Nucleic Acids

Benda, Ladislav, Sochorová Vokáčová, Zuzana, Straka, Michal, Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.23 MB

english, 2012

21

DNA and RNA Charge Transport Effect of Sequence, Stacking, Structure and Hg Incorporation

Kratochvilova, Irena, Sychrovsky, Vladimir, Pav, Ondrej, Vala, Martin

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

22

Indirect NMR Spin−Spin Coupling Constants 3J (P,C) and 2J (P,H) across the P−O···H−C Link Can Be Used for Structure Determination of Nucleic Acids

Sychrovský, Vladimír, Šponer, Jiří, Trantírek, Lukáš, Schneider, Bohdan

Journal:

Journal of the American Chemical Society

Year:

2006

Language:

english

File:

PDF, 214 KB

english, 2006

23

Guanine Bases in DNA G-Quadruplex Adopt Nonplanar Geometries Owing to Solvation and Base Pairing

Sychrovský, Vladimír, Sochorová Vokáčová, Zuzana, Trantírek, Lukáš

Journal:

Journal of Physical Chemistry A

Year:

2012

Language:

english

File:

PDF, 2.36 MB

english, 2012

24

Impact of nucleic acid self-alignment in a strong magnetic field on the interpretation of indirect spin–spin interactions

Vavřinská, Andrea, Zelinka, Jiří, Šebera, Jakub, Sychrovský, Vladimír, Fiala, Radovan, Boelens, Rolf, Sklenář, Vladimír, Trantírek, Lukáš

Journal:

Journal of Biomolecular NMR

Year:

2016

Language:

english

File:

PDF, 720 KB

english, 2016

25

Determination of the configuration in six-membered saturated heterocycles (N, P, S, Se) and their oxidation products using experimental and calculated NMR chemical shifts

Buděšínský, Miloš, Vaněk, Václav, Dračínský, Martin, Pohl, Radek, Poštová-Slavětínská, Lenka, Sychrovský, Vladimír, Pícha, Jan, Císařová, Ivana

Journal:

Year:

2014

Language:

english

File:

PDF, 1.60 MB

english, 2014

26

Pyramidalization of the Glycosidic Nitrogen Provides the Way for Efficient Cleavage of the N-Glycosidic Bond of 8-OxoG with the hOGG1 DNA Repair Protein

Šebera, Jakub, Trantírek, Lukáš, Tanaka, Yoshiyuki, Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 4.80 MB

english, 2012

27

The benchmark of 31 P NMR parameters in phosphate: a case study on structurally constrained and flexible phosphate

Fukal, Jiří, Páv, Ondřej, Buděšínský, Miloš, Šebera, Jakub, Sychrovský, Vladimír

Journal:

Physical Chemistry Chemical Physics

Year:

2017

Language:

english

File:

PDF, 1.57 MB

english, 2017

28

Theoretical Study of the Scalar Coupling Constants across the Noncovalent Contacts in RNA Base Pairs: The cis - and trans -Watson−Crick/Sugar Edge Base Pair Family

Vokáčová, Zuzana, Šponer, Jiří, Šponer, Judit E., Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 283 KB

english, 2007

29

29Si–13C spin–spin couplings over Si–O–Carom link

Jan Sýkora, Vratislav Blechta, Vladimír Sychrovský, Jiří Hetflejš, Stanislav Šabata, Ludmila Soukupová, Jan Schraml

Journal:

Magnetic Resonance in Chemistry

Year:

2006

Language:

english

File:

PDF, 124 KB

english, 2006

30

Theoretical Calculation of the NMR Spin−Spin Coupling Constants and the NMR Shifts Allow Distinguishability between the Specific Direct and the Water-Mediated Binding of a Divalent Metal Cation to Guanine

Sychrovský, Vladimír, Šponer, Jiří, Hobza, Pavel

Journal:

Journal of the American Chemical Society

Year:

2004

Language:

english

File:

PDF, 283 KB

english, 2004

31

Synthesis of locked cyclohexene and cyclohexane nucleic acids (LCeNA and LCNA) with modified adenosine units

Šála, Michal, Dejmek, Milan, Procházková, Eliška, Hřebabecký, Hubert, Rybáček, Jiří, Dračínský, Martin, Novák, Pavel, Rosenbergová, Šárka, Fukal, Jiří, Sychrovský, Vladimír, Rosenberg, Ivan, Nencka, R

Journal:

Organic & Biomolecular Chemistry

Year:

2015

Language:

english

File:

PDF, 1.02 MB

english, 2015

32

The mechanism of the glycosylase reaction with hOGG1 base-excision repair enzyme: concerted effect of Lys249 and Asp268 during excision of 8-oxoguanine

Šebera, Jakub, Hattori, Yoshikazu, Sato, Daichi, Řeha, David, Nencka, Radim, Kohno, Takashi, Kojima, Chojiro, Tanaka, Yoshiyuki, Sychrovský, Vladimír

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 4.78 MB

english, 2017

33

Sugar Pucker Modulates the Cross-Correlated Relaxation Rates across the Glycosidic Bond in DNA

Sychrovský, Vladimír, Müller, Norbert, Schneider, Bohdan, Smrečki, Vilko, Špirko, Vladimir, Šponer, Jiří, Trantírek, Lukáš

Journal:

Journal of the American Chemical Society

Year:

2005

Language:

english

File:

PDF, 96 KB

english, 2005

34

The effect of chemical modification of DNA base on binding of HgII and AgI in metal-mediated base pairs

Šebera, Jakub, Tanaka, Yoshiyuki, Ono, Akira, Sychrovský, Vladimír

Journal:

Inorganica Chimica Acta

Year:

2016

Language:

english

File:

PDF, 814 KB

english, 2016

35

The activation of N-glycosidic bond cleavage performed by base-excision repair enzyme hOGG1; theoretical study of the role of Lys 249 residue in activation of G, OxoG and FapyG

Šebera, Jakub, Trantírek, Lukáš, Tanaka, Yoshiyuki, Nencka, Radim, Fukal, Jiří, Sychrovský, Vladimír

Journal:

Year:

2014

Language:

english

File:

PDF, 666 KB

english, 2014

36

HgII/AgI-mediated base pairs and their NMR spectroscopic studies

Dairaku, Takenori, Furuita, Kyoko, Sato, Hajime, Šebera, Jakub, Nakashima, Katsuyuki, Ono, Akira, Sychrovský, Vladimír, Kojima, Chojiro, Tanaka, Yoshiyuki

Journal:

Inorganica Chimica Acta

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

37

Ascorbigen A-NMR identification

Sychrovský, Vladimír, Šaman, David, Fiala, Radovan, Humpa, Otakar, Sýkora, Jan, Kessler, Pavel, Blechta, Vratislav, Dobrev, Petre, Schraml, Jan

Journal:

Magnetic Resonance in Chemistry

Year:

2019

Language:

english

File:

PDF, 1.28 MB

english, 2019

38

Leading RNA Tertiary Interactions: Structures, Energies, and Water Insertion of A-Minor and P-Interactions. A Quantum Chemical View

Šponer, Judit E., Réblová, Kamila, Mokdad, Ali, Sychrovský, Vladimír, Leszczynski, Jerzy, Šponer, Jiří

Journal:

Journal of Physical Chemistry B

Year:

2007

Language:

english

File:

PDF, 436 KB

english, 2007

39

B k approximation applied to CI-SDTQ

SYCHROVSKÝ, VLADIMÍR, ČÁRSKY, PETR

Journal:

Molecular Physics

Year:

1996

Language:

english

File:

PDF, 409 KB

english, 1996

40

Formation of a Thymine-Hg II -Thymine Metal-Mediated DNA Base Pair: Proposal and Theoretical Calculation of the Reaction Pathway

Šebera, Jakub, Burda, Jaroslav, Straka, Michal, Ono, Akira, Kojima, Chojiro, Tanaka, Yoshiyuki, Sychrovský, Vladimír

Journal:

Chemistry - A European Journal

Year:

2013

Language:

english

File:

PDF, 1.12 MB

english, 2013

41

Benchmark Theoretical and Experimental Study on 15 N NMR Shifts of Oxidatively Damaged Guanine

Dračínský, Martin, Šála, Michal, Klepetářová, Blanka, Šebera, Jakub, Fukal, Jiří, Holečková, Veronika, Tanaka, Yoshiyuki, Nencka, Radim, Sychrovský, Vladimír

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 1.70 MB

english, 2016

42

Charge transfer through DNA/DNA duplexes and DNA/RNA hybrids: Complex theoretical and experimental studies

Kratochvílová, Irena, Vala, Martin, Weiter, Martin, Špérová, Miroslava, Schneider, Bohdan, Páv, Ondřej, Šebera, Jakub, Rosenberg, Ivan, Sychrovský, Vladimír

Journal:

Biophysical Chemistry

Year:

2013

Language:

english

File:

PDF, 704 KB

english, 2013

43

Bk approximation applied to the multireference configuration interaction method

Vladimír Sychrovský, Petr Čársky, Hans Lischka

Journal:

International Journal of Quantum Chemistry

Year:

2000

Language:

english

File:

PDF, 310 KB

english, 2000

44

Chemical Shifts in Nucleic Acids Studied by Density Functional Theory Calculations and Comparison with Experiment

Dr. Judith M. Fonville, Prof. Dr. Marcel Swart, Dr. Zuzana Vokáčová, Prof. Dr. Vladimír Sychrovský, Dr. Judit E. Šponer, Prof. Dr. Jiří Šponer, Prof. Dr. Cornelis W. Hilbers, Prof. Dr. F. Matthias Bic

Journal:

Chemistry - A European Journal

Year:

2012

Language:

english

File:

PDF, 1.95 MB

english, 2012

45

Influence of the O-phosphorylation of serine, threonine and tyrosine in proteins on the amidic15N chemical shielding anisotropy tensors

Jiří Emmer, Andrea Vavrinská, Vladimír Sychrovský, Ladislav Benda, Zdeněk Kříž, Jaroslav Koča, Rolf Boelens, Vladimír Sklenář, Lukáš Trantírek

Journal:

Journal of Biomolecular NMR

Year:

2013

Language:

english

File:

PDF, 414 KB

english, 2013

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